Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
3KFX Chain:A ((38-279))
------------------TRIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQST------------NGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
3KFX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117280 for 1785 contacts (-65.7/contact) +
2D Compatibility (PS) -24387 + (NN) -7488 + (LL) 1352
1D Compatibility (HY) -33200 + (ID) 11350
Total energy: -192353.0 ( -107.76 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_3KFX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KFX-query.scw
PDB file :
Tito_Scwrl_3KFX.pdb
: