Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALSYRVSELQSTIPEHILQSTFVHVISSNWSGLQTESIPEEMKQIVEEQGNKLHWAALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIMHLCAISVDRYIAIKKPIQANQYNSRATAFIKITVVWLISIGIAIPVPIKGIETDVDNPNNITCVLTKERFGDFM------LFGSLAAFFTPLAIMIVTYFLTIHALQKKAYLVKNKPPQRLTWLTVSTVFQRDETPCSSPEKVAMLDGSRKDKALPNSGDETLMRRTSTIGKKSVQTISNEQRASKVLGIVFFLFLLMWCPFFITNITLVLCDSCNQTTL-QMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITCNYRATKSVKTLRKRSSKIYFRNPMAENSKFFKKHGIRNGINPAMYQSPMRLRSSTIQSSSIILLDTLLLTENEGDKTEEQVSYV |
| 2VT4 Chain:A ((15-298)) | ---------------------------------------------------------SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGA-TLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSF-LPIMMHWWRDEDPQALKC-YQDPGCCDFVTNRAYAIASSIISFYIPLLIMI---FVALRVYRE------------------------------AKEQIR------------------------------------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVF----NRDLVPDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLLA------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -244213 for 1950 contacts (-125.2/contact) +
2D Compatibility (PS) -26283 + (NN) -3243 + (LL) 14416
1D Compatibility (HY) -33200 + (ID) 5000
Total energy: -297523.0 ( -152.58 by residue)
QMean score : 0.253
|
|
|