Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGNRSTADADGLLAGRGPAAGASAGASAGLAGQGAAALVGGVLLIGAVLA--GNSLVCVSVATERALQTPTNSFIVSLAAADLLLALLVLPLFVYSEVQGGAWLLSPRLCDA-----LMAMDVMLCT-ASIFNLCAISVDRFVAVAVPLRYNRQGGSRRQLLLIGATWLLSAAVAAPVLCGLND---VRGRDPA--------VCRLED---RDYVVYSSVCS-FFLPCPLMLLLYWATF----RGLQRWEVAR-----RAKLHGRAP-RRPSGPGPPSPTPPAPRLPQDPCGPDCAPPAPGL-----PRGPCGPDCAPAAPGLPPDPCGPDCAPPAPGLPQDPCGPDCAPPAPGLPRGPCGPDCAPPAPGLPQDPCGPDCAPPAPGLPPDPCGSNCAPPDAVRAAALPPQTPPQTRRRRRAKITG----------RERKAMRVLPVVVGAFLLCWTPFFVVHITQALCPACSVPPR-LVSAVTWLGYVNSALNPVIYTVFNAEFRNVFRKALRACC |
3EML Chain:A ((32-467)) | ----------------------------------------------AVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF---------AITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRN------AKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQK------------RWDEAAVNLAK------SRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EML.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -147995 for 2729 contacts (-54.2/contact) +
2D Compatibility (PS) -38270 + (NN) -930 + (LL) 1584
1D Compatibility (HY) -34400 + (ID) 6150
Total energy: -226161.0 ( -82.87 by residue)
QMean score : 0.153
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