Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVPHLLLLCLLPLVRATEPHEGRADEQSAEAALAVPNASHFFSWNNYTFSDWQNFVGRRRYGAESQNPTVKALLIVAYSFIIVFSLFGNVLVCHVIFKNQRMHSATSLFIVNLAVADIMITLLNTPFTLVRFVNSTWIFGKGMCHVSRFAQYCSLHVSALTLTAIAVDRHQVIMHPLKPRISIT--KGVIYIAVIWTMATFFS-LPHAICQKLFTFKYSEDIVRSLCLPDFPEPADLFW-KYLDLATFILLYILPLLIISVAYARVAKKLWLCNMIGDVTTEQYFALRRKKK---------KTIKMLMLVVVLFALCWFPLNCYVLLLSSKVIRTN---NALYFAFHWFAMSSTCYNPFIYCWLNENFRIELKALLSMCQRPPKPQEDRPPSPVPSFRVAWTEKNDGQRAPLANNLLPTSQLQSGKTDLSSVEPIVTMS |
| 2Y00 Chain:A ((3-300)) | --------------------------------------------------------------AELLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPI-----MMHWWRDEDPQALKCYQD-PGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYRE----------AKEQ---------SRVMLMREHKALKTLGIIMGVFTLCWLP---FFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA-------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y00.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -257676 for 1994 contacts (-129.2/contact) +
2D Compatibility (PS) -27761 + (NN) -13119 + (LL) 9356
1D Compatibility (HY) -29600 + (ID) 4150
Total energy: -322950.0 ( -161.96 by residue)
QMean score : 0.351
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