Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAVQGSQRRLLGSLNSTPTAIPQLGLAANQTGARCLEVSISDGLFLSLGLVSLV-ENALVVATIAKNRNLHSPMYCFICCLALSDLLVSGSNVLETAVILLLEAGALVARAAVLQQLDNVIDVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAVAAIWVASVVFSTLFIAYY----DHVAVLLCL-------------------VVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPVHQGFGLKGAVTLTILLGIFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALI-ICNAIIDPLIYAFHSQELRRTLKEVLTCSW |
| 4LDL Chain:A ((186-461)) | ------------------------------------------GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTF---GNFWCEFWTSIDVLCVTASIETLC---VIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ---KFALKEH--------KALKTLGIIMGTFTLCWLPFFI-VNIVHVIQDN----LIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -242720 for 1763 contacts (-137.7/contact) +
2D Compatibility (PS) -26361 + (NN) -15213 + (LL) 3536
1D Compatibility (HY) -29200 + (ID) 3850
Total energy: -313808.0 ( -178.00 by residue)
QMean score : 0.331
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