Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQAAGHPEPLDSRGSFSLPTMGANVSQDNGTGHNATFSEPLPFLYVLLPAVYSGICAVGLTGNTAVILVILRAPKMKTVTNVFILNLAVADGLFTLVLPVNIAEHLLQYWPFGELLCKLVLAVDHYNIFSSIYFLAVMSVDRYLVVLATVRSRHMPWRTYRGAKVASLCVWLGVTVLVLPFFSFAGVYSNELQVPSCGLSFPWPE-QVWFKASRVYTLVLGFVLPVCTICVLYTDLLRRLRAVRL------------RSGAKALG--------------------------------KARRKVTVLVLVVLAVCLLCWTPFHL-------ASVVALTTDLPQTPLVISMSYVITSLSYANSCLNPFLYAFLDDNFRKNFRSILRC |
4MBS Chain:A ((34-359)) | ----------------------------------------------LLPPLYSLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFFLLTVPF-WAHYAAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFA--LKARTVTFGVVTSVITWVVAVFASLPNIIFTRSQKEGLHY-TCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEEEKKRHRDVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQ-VTETLGMTHCCINPIIYAFVGEEFRNYLLVFFQ- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4MBS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -245977 for 1977 contacts (-124.4/contact) +
2D Compatibility (PS) -27180 + (NN) -2787 + (LL) 1204
1D Compatibility (HY) -35200 + (ID) 4050
Total energy: -313990.0 ( -158.82 by residue)
QMean score : 0.263
|
|
|