Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEGEPSQPPNSSWPLSQNGTNTEATPATNLTFSSYYQHTSPVAAMFIVAYALIFLLCMVGNTLVCFIVLKNRHMHTVTNMFILNLAVSDLLVGIFCMPTTLVDNLITGWPFDNATCKMSGLVQGMSVSASVFTLVAIAVERFRCIVHPFREK--LTLRKALVTIAVIWALALLIMCPSAVTLTVTREEHHFMVDARNRSYPLYS---CWEAWPEKGMRRVYTTVLFSHIYLAPLALIVVMYARIARKLCQAPGPAPGGEEAADPRASR----RRARVVHMLVMVALFFTLSWLPLWALLLLIDYGQLSAPQLHLVTVYAFPFAHWLAFFNSSANPIIYGYFNENFRRGFQAAFRARLCPRPSGSHKEAYSERPGGLLHRRVFVVVRPSDSGLPSESGPSSGAPRPGRLPLRNGRVAHHGLPREGPGCSHLPLTIPAWDI |
2Y01 Chain:A ((19-296)) | --------------------------------------------------ALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALV--------SFLPIMMHWWRDEDPQALKCYQDPGC----CDFVTNRAYAIASSIISFYIPLLIMIFVALRVYR---EAKEQ------------SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNR------DLVPDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLLA------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y01.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -240654 for 1928 contacts (-124.8/contact) +
2D Compatibility (PS) -26979 + (NN) -14224 + (LL) 6264
1D Compatibility (HY) -23600 + (ID) 3850
Total energy: -303043.0 ( -157.18 by residue)
QMean score : 0.293
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