Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRLNSSAPGTPGTPAADPFQRAQAGLEEALLAPGFGNASGNASERVLAAPSSELDVNTDIYSKVLVTAVYLALFVVGTVGNTVTAFTLARKKSLQSLQSTVHYHLGSLALSDLLTLLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVERYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAVPMLFTMGEQNRSADGQHAGGLVCTPTIHTATVKVVIQVNTFMSFIFPMVVISVLNTIIANKLTVMVRQAAEQGQVCTVGGEHSTFSMAIEPGRVQALRH--GVRVLRAVVIAFVVCWLPYHVRRLMFCYISDEQWTPFLYDFYHYFYMVTNALFYVSSTINPILYNLVSANFRHIFLATLACLCPVWRRRRKR-PAFSRKADSVSSNHTLSSNATRETLY |
| 2VT4 Chain:A ((16-298)) | ----------------------------------------------------------------LLMALVVLLIVAGNV------LVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFG--ATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISAL--VSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM----IFVALRVY---REAKEQIR------------------------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL--VP------DWLFVAFNWLGYANSAMNPIIY----------------CRSPDFRKAFKRLLA------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -188164 for 1999 contacts (-94.1/contact) +
2D Compatibility (PS) -27321 + (NN) -9306 + (LL) 9448
1D Compatibility (HY) -24800 + (ID) 4000
Total energy: -244143.0 ( -122.13 by residue)
QMean score : 0.328
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