Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGHQNHTFSSDFILLGLFSSSPTSVVFFLVLFVIFIMSVTENTLMILLIRSDSRLHTPMYFLLSHLSLMDILHVSNIVPKMVTNFLSGSRTISFAGCGFQVFLSLTLLGGECLL--LAAMSCDRYVAICHPLRYPILMKEYASALMAGGSWLIGVFNSTVHTAYALQFPFCGSRAIDHFFCEVPAMLKLSCA-------DTTRYERGVCVSAVIFLLIPFSLISASYGQIILTV----LQMKSSEARKKSFSTCSFHMIVVTM--------YYGPFIFTYMRPKSYHTPGQDKFLAI--FYTILTPTLNPFIYSFRNKDVLAVMKNMLKSNFLHKKMNRKIPECVFCLFLC |
| 1F88 Chain:A ((44-312)) | ------------------------------MFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFA--TLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMAL--------------ACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA----SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGP---IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206185 for 1843 contacts (-111.9/contact) +
2D Compatibility (PS) -23958 + (NN) 531 + (LL) 3580
1D Compatibility (HY) -24400 + (ID) 3000
Total energy: -253432.0 ( -137.51 by residue)
QMean score : 0.227
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