Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEPRKNVTDFVLLGFTQNPKEQKVLFVMFLLFYILTMVG---NLLIVVTVTVSETLGSPMYFFLAGLSFIDII-----YSSSISPRLISGLFFGNNSISFQSCMAQLFIEHIFGGSEVFL--LLVMAYDCYVAICKPL--------HYLV-IMRQWV----CVVLLVVSWVGGFLHSVFQLSIIYGLPFCGPNVIDHFFCDMYPLLKLVCTDTHAIGLLVVANGGLACTIVFLLLLISYGVILHSLKNLSQKGR-----QKALSTCSSHMTVVVFFFVPCIFMYA---------RPARTFPIDKSVSVFYTVITPMLNPLIYTLRNSEMTSAMKKLWRRDLISSST |
1LN6 Chain:A ((45-315)) | --------------------------------FLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATL-------GGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGW-SRYIPEGMQCS-------CG--------IDYYTPHEETNNESFVIYMFVV-----HFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVVATTLCCGKNPL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LN6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -205955 for 1703 contacts (-120.9/contact) +
2D Compatibility (PS) -22035 + (NN) 16266 + (LL) 4520
1D Compatibility (HY) -27200 + (ID) 3050
Total energy: -237454.0 ( -139.43 by residue)
QMean score : 0.130
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