Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTETSLSSQCFPMSVLNNTIAEPLIFLLMGIPGLKATQYWISIPFC---------LLYVVAVSGNSMILFVVLCERSLHKPMYYFLSMLSATDLSLSLCTLSTTL-----GVFWFEAREINLNACIAQMFFLHGFTFMESGVLLAMAFDRFVAICYPLRYTTILTNARIAKIGMSMLIRNVAVMLPVMLFVKRLSFCSSMVLSHSYCYHVDLIQLSC-----TDNRINSILGLFALLSTTGFDCPCILL--SYILIIRSVLSIASSEERRKAFNTCTSHIS--------AVSIFYLPLISLSLVHRYGHSAPPFVHIIMA--NVFLLIPPVLNPIIYSVKIKQIQKAIIKVLIQKHSKSNHQLFLIRDKAIYE |
| 3C9L Chain:A ((24-321)) | ---------------------------------FEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFAT---LGGEIALWSLVVLAI--ERYVVVCKP------MSNFRFGE--------NHAIMGVAFTWVMALA-CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAF-YIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNDDE------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217259 for 2012 contacts (-108.0/contact) +
2D Compatibility (PS) -26671 + (NN) -3748 + (LL) 5876
1D Compatibility (HY) -24800 + (ID) 3600
Total energy: -270202.0 ( -134.30 by residue)
QMean score : 0.267
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