Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSASNITLTHPTAFLLVGIPGLEHLHIWISIPFCLAYTLALLGNCTLLLIIQADAALHEPMYLFLAMLAAIDLVLSSSALPKMLAIFWFRDREINFFACLAQMFFLHSFSIM----ESAVLLAMAFDRYVAICKPLHYTKVLTGSLITKIGMAAVARAVTLMTPLPFLLRCF-----HYCRG--PVIAHCYCEHMAVVRLACGDTSFNNIYGIAVAM--FIVVLDLLLVILSYIF-----ILQAVLLLASQEARYKAFGTCVSHIGAILAFYTTVVISSVMHRVARH-AAPHVHILLANFYLLFPPMVNPIIYGVKTKQIRESILGVFPRKDM |
4LDE Chain:A ((197-447)) | ----------------------------------------VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCE----FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKN---------KARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE------TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ---KFALKE--HKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILL-NWIGYVNSGFNPLIYCRSPDFRIAFQELLCL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221664 for 1564 contacts (-141.7/contact) +
2D Compatibility (PS) -23219 + (NN) -7044 + (LL) 6988
1D Compatibility (HY) -22000 + (ID) 3400
Total energy: -270339.0 ( -172.85 by residue)
QMean score : 0.306
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