Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLVSFFSFLSKPLIMLLSNSSWRLSQPSFLLVGIPGLEESQHWIALPLGILYLLALV-GNVTILFIIWMDPSLHQSMYLFLSMLAAIDLVLASSTAPKALAVLLVHAHEIGYIVC--LIQMFFIHAFSSMESGVLVAMALDCYVAICHPLHHSTILHPGVIGCIG-MVVLVRGLLLLIPFPILLGKLIFCQATIIGHAYCEHMAVVKLACSETTVNRAYGLTMALLVIGLDVLAIGVSYAHILQAVLKVPGSEARL-----KAFSTCGSHICVILVFYVPGIFSFLTHRFGHH-VPHHVHVLLATWYLLMPPALNPLVYGVKTQQIRQRVLRVFTQKD |
| 4LDL Chain:A ((191-447)) | ---------------------------------------------------LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET--LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAI---NCYAEE------TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ---KFALKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILL-NWIGYVNSGFNPLIYCRSPDFRIAFQELLCL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -267028 for 1803 contacts (-148.1/contact) +
2D Compatibility (PS) -24715 + (NN) -6369 + (LL) 5516
1D Compatibility (HY) -22000 + (ID) 3000
Total energy: -317596.0 ( -176.15 by residue)
QMean score : 0.181
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