Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGNITADNSSMSCTIDHTIHQTLAPVVYVTVLVVGFPANCLSLYFGYLQIKARNELGVYLCNLTVADLFYICSLPFW-LQYVLQHDNWSHGDLSCQVCGILLYENIYISVGFLCCISVDRYLAVAHPFRFHQFRTLKAAVGVSVVIWAKELLTSIYF-LMHEEVIEDENQHRVCFEHYPIQA--WQRAINYYRFLVGFLFPICLLLASYQGILRAVRRSHGTQKSR-KD----QIQRLVLSTVVIFLACFLPYHVLLLVRSVWEASCDFAKG---VFNAYHFSLLLTSFNCVADPVLYCFVSETTHRDLARLRGACLAFLTCSRTGRAREAYPLGAPEASGKSGAQGEEPELLTKLHPAFQTPNSPGSGGFPTGRLA |
4RWA Chain:A ((128-400)) | --------------------------LYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLME--TWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWV--LASGVGVPIMVMAVTRPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLL---------GSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTL----VDIDRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLC---------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RWA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -226857 for 1885 contacts (-120.3/contact) +
2D Compatibility (PS) -25318 + (NN) -6601 + (LL) 4772
1D Compatibility (HY) -26400 + (ID) 3950
Total energy: -284354.0 ( -150.85 by residue)
QMean score : 0.218
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