Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDQRNYTRVKEFTFLGITQSRELSQVLFTFLFLVYMTTLMGNFLIMVTVTCESHLHTPMYFLLRNLSILDI--CFSSITAPKVLIDLLSETKTISFSGCVTQMFFFHLLGGADVFSLSVMAFDRYIAISKPLHYMTIMSRGRCTGLIVASWVGGFVHSIAQISLLLPLPFCGPNVLDTFYCDVPQVLKLACT-DTFTLELLMISNNGLVSWFVFFFLL-----------ISYTVILMMLRSHTGEGRRKAISTCTSHITVVTLHFVPCIYVYARP----FTALPTDTA-----ISVTFTVISPLLNPIIYTLRNQEMKLAMRKL----KRRLGQSERILIQ |
| 4J4Q Chain:A ((39-326)) | -------------------------MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT--TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTWV---------MALACAAP---PLVGWSRY--IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J4Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -203728 for 1922 contacts (-106.0/contact) +
2D Compatibility (PS) -26013 + (NN) -403 + (LL) 3680
1D Compatibility (HY) -20800 + (ID) 3450
Total energy: -250714.0 ( -130.44 by residue)
QMean score : 0.201
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