Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKINNVTEFIFWGLSQSPEIEKVCFVVFSFFYIIILLGNLLIMLTVCLSNLFKSPMYFFLSFLSFVDICYSSVTAPKMIVDLLAKDKTISYVGCMLQLFGVHFFGCTEIFILTVMAYDRYVAICKPLHYMTIMNRETCNKMLLGTWVGGFLHSIIQVALVVQLPF---------------CGPNEIDHYFCDVHPVLKLACTETYIVGVVVTANSGTIALGSFVILLISYSIILVSLRKQSAEGRRKALST------CGSHIAMVVIFFGPC--------TFMYMRPDTTFSEDKM--VAVFYTIITPMLNPLIYTLRNAEVKNAMKKLWGRNVFLEAKGK |
| 2YDO Chain:A ((18-312)) | ---------------------------------VLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF-----AIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVP-MNYMVYFNFFACVLVPL---LLMLGVYLRIFLAARRQLKQMES-----------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPF |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -247923 for 1880 contacts (-131.9/contact) +
2D Compatibility (PS) -25520 + (NN) -8266 + (LL) 4356
1D Compatibility (HY) -25600 + (ID) 2950
Total energy: -305903.0 ( -162.71 by residue)
QMean score : 0.299
|
|
|