Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQAALTAFFVLLFSLLSLLGIAANGFIVLVLGREWLRYGRLLPLDMILISLGASRFCLQLVGTVHNFYYSAQKVEYSGGLGRQFFHLHWHFLNSATFWFCSWLSVLFCVKIANITHSTFLWLKWRFPGWVPWLLLGSVLISFIITLLFFWVNYPVYQEFLIRKFSGNMTYKW-NT---R---IETYYFPSLKLVIWSIPFSVFLVSIMLLINSLRRHTQRMQHNGHSLQDPSTQAHTRALKSLISFLILYALSFLSLIID-AAKF-IS------MQNDFYWPWQIAVYLCISVHPFILIFSNLKLRSVFSQLLLLARGFWVA |
| 2KS9 Chain:A ((34-324)) | -------LWAAAYTVIVVTSVVGNVVVMWIILAHK---RMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAII---HPLQPRLS---ATATKVVICVIWVLALLLAFPQGYYST--------TETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSD--RYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAG |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2KS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -229026 for 2140 contacts (-107.0/contact) +
2D Compatibility (PS) -27374 + (NN) -1162 + (LL) 2816
1D Compatibility (HY) -19600 + (ID) 1650
Total energy: -275996.0 ( -128.97 by residue)
QMean score : 0.255
|
|
|