Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------------------------------------------AISCGTVAGSLAPCATYLSKGGLVPP---SCCAGVKTLNSMAK-----------TTPDRQQACRCIQSTAKSIS-----GLNPSLASGLPGKCGVSIPYPISMSTNCNNIK--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAA------GSVVDALRAVRNAAPDLPCEVEVDS-LEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26942 for 406 contacts (-66.4/contact) +
2D Compatibility (PS) -8586 + (NN) -2258 + (LL) -256
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -40342.0 ( -99.36 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: