Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
CEVTQLAVCASAILGGTKPSGECCGNLRAQQGCFCQYVKDPNYGHYVNSPHARETLQTCGIALPHC----------------------------------------
1QSD Chain:A ((4-105))
---TQLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPY-DLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELLDS
General information:
TITO was launched using:
RESULT:
Template:
1QSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13635 for 296 contacts (-46.1/contact) +
2D Compatibility (PS) -6147 + (NN) 2781 + (LL) 544
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -18807.0 ( -63.54 by residue)
QMean score : 0.136
(partial model without unconserved sides chains):
PDB file :
Tito_1QSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QSD-query.scw
PDB file :
Tito_Scwrl_1QSD.pdb
: