Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QCNAGSLAVCTSP----IISGTPPSKT--CCNNLKSQRGCFCKFARNPAYSSYINSRNAGKTLTSCGIAVPKC
2RP4 Chain:A ((315-385))
DDSAAEWNVSRTPDGDYRLAITCPNKEWLLQSIEGMIKEAAAEVLRNPNQENLRRHANKLLSLKKRAYELP--
General information:
TITO was launched using:
RESULT:
Template:
2RP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5314 for 312 contacts (-17.0/contact) +
2D Compatibility (PS) -6637 + (NN) -577 + (LL) 120
1D Compatibility (HY) 800 + (ID) 600
Total energy: -12208.0 ( -39.13 by residue)
QMean score : 0.184
(partial model without unconserved sides chains):
PDB file :
Tito_2RP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RP4-query.scw
PDB file :
Tito_Scwrl_2RP4.pdb
: