Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
RASKKASCDLM--QLSPCVSAFSGVGQGSPSSACCSKLKA-----------QGSSCLCLYKDDPKVKRI--VSSNRTKRVFTACKVPAPNC
1AFH Chain:A ((2-80))
-----ISCGQVASAIAPCISYARGQ-GSGPSAGCCSGVRSLNNAARTTADRR-AACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18703 for 439 contacts (-42.6/contact) +
2D Compatibility (PS) -6646 + (NN) -2883 + (LL) 436
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -32596.0 ( -74.25 by residue)
QMean score : 0.200
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: