Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCNMSNDEFMKCQPAAAATSNPTTNPSAGCCSALSHADL----------NCLCSYKNSPWLSIY-NIDPNRAMQLPAKCGLTMPANC
1T12 Chain:A ((4-79))
-CGQVTSNLAPCLAYLRNTG-----PLGRCCGGVKALVNSARTTEDRQIACTC-LKSA--AGAISGINLGKAAGLPSTCGVNIPY--
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21741 for 436 contacts (-49.9/contact) +
2D Compatibility (PS) -6658 + (NN) -1738 + (LL) -40
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -34177.0 ( -78.39 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: