Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGKCGKTPAEKVALKLAPCAKAAQDPGARPPAACCAAVRDIGTHQSHACLCAVLLSSTVRRSGVKPEVAITIPKRCKLANRPVGYKCGAYTLPSLQG
1N89 Chain:A ((5-65))
-------------SQLAVCASAILSG-AKPSGECCGNLRAQ----Q-GCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP----------------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24913 for 385 contacts (-64.7/contact) +
2D Compatibility (PS) -6186 + (NN) -1418 + (LL) 772
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -34995.0 ( -90.90 by residue)
QMean score : 0.302
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: