Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AEGPAGCQDDVVALNEACYQYVQKGAPTVPPSQECCDAVRRVDV----------PCVCSYLGSPGVR-DNISMEKVFYVSQQCGVSIPGNCGGSKV
1SIY Chain:A ((2-78))
-----TCGQVQGNL-AQCIGFLQKGG---VVPPSCCTGVKNILNSSRTTADRRAVCSCLKA--AAGAVRGINPNNAEALPGKCGVNIP--------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31298 for 463 contacts (-67.6/contact) +
2D Compatibility (PS) -6578 + (NN) 97 + (LL) -408
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -41437.0 ( -89.50 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: