Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGPAAGGAAVADPAGCQDDVVALNEACYKYVQKGAPTVPPSQECCDAVKSVDV----------PCVCSYLGSPGVRDNISMEKVFYVSQQCGVSIPGNCGGSKV
1SIY Chain:A ((2-78))
--------------TCGQVQGNL-AQCIGFLQKGG---VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAV-RGINPNNAEALPGKCGVNIP--------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28933 for 477 contacts (-60.7/contact) +
2D Compatibility (PS) -6652 + (NN) 108 + (LL) 140
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -39487.0 ( -82.78 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: