Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GPAGCQDDVVALNEACYQYVQKGAPTVPPSQECCDAVKSVDV----------PCVCSYLGSPGVR-DNISMEKVFYVSQQCGVSIPGNCGGSMV
1SIY Chain:A ((2-78))
---TCGQVQGNL-AQCIGFLQKGG---VVPPSCCTGVKNILNSSRTTADRRAVCSCLKA--AAGAVRGINPNNAEALPGKCGVNIP--------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29248 for 463 contacts (-63.2/contact) +
2D Compatibility (PS) -6514 + (NN) 153 + (LL) -512
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -39421.0 ( -85.14 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: