Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------VYRPWPSECVEVANVM-VEQCKMFFVHQE-----------------SPPTAECCRWFSSRRKYAKERRRLCRCLEFLTTAF------------KNLKPDVLALSDQCHFSSG---FPMSRDHTCA
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQG-----CMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44887 for 537 contacts (-83.6/contact) +
2D Compatibility (PS) -8883 + (NN) -2700 + (LL) 580
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -58190.0 ( -108.36 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: