Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APGCDTVDTDLAPCISYLQTGTGNPTVQCCSGVKTLAGTAQTTEDRKAICECIKTAAIRVKP-VANAVKSLPGLCSVTLPFPISIATDCNKIV
1AFH Chain:A ((1-92))
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV-
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69967 for 738 contacts (-94.8/contact) +
2D Compatibility (PS) -9266 + (NN) -1648 + (LL) 192
1D Compatibility (HY) -5600 + (ID) 1950
Total energy: -88239.0 ( -119.57 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: