Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------------------------------------D---ISCGQVVA--SLSPCISYVRQGGAIPAPC---CSGINSLNNQAT-----------STPDRQTACNCIKSAAAGIS-----GINFSLAGSLPSKCGVNLPYKISPSIDCSTVQ--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNA-APDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35156 for 456 contacts (-77.1/contact) +
2D Compatibility (PS) -8911 + (NN) 699 + (LL) -296
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -47514.0 ( -104.20 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: