Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QVTLCGMTKEGFASCKPSVQTGVNPLPPSYSCCSALEKAD----------LSCLCFFKKNYPKMLTDNNIDPNLAMQLPAKCNMAGSFSCK
1BWO Chain:A ((2-79))
---DCGHVDSLVRPCLSYVQGG---PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIAR--GI--HNLNEDNARSIPPKCGVNLPY---
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18476 for 438 contacts (-42.2/contact) +
2D Compatibility (PS) -6955 + (NN) -4061 + (LL) 328
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -32014.0 ( -73.09 by residue)
QMean score : 0.183
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: