Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVCDMSNEQFMSCQPAAAKTTDPPAAPSQACCDALAGADL----------KCLCGYKNSPWMGVY-NIDPKRAMELPAKCGLATPPDC
1T12 Chain:A ((3-79))
-TCGQVTSNLAPCLAYLRNTG-----PLGRCCGGVKALVNSARTTEDRQIACTC-LKSA--AGAISGINLGKAAGLPSTCGVNIPY--
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16323 for 443 contacts (-36.8/contact) +
2D Compatibility (PS) -6820 + (NN) -3390 + (LL) -100
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -29883.0 ( -67.46 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: