Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----APCEV----GQLTVCMPAITTGAKPSGACCANLGAQQGCFCQYAKDPALGRYITSPHARDTLLSCGLAVPRC
2JTM Chain:A ((1-60))
MSSGKKPVKVKTPAGKEAELVPEKVWALAPKG--------RKGVKIGLFKDPETGKYFRHKLPDDYPI---------
General information:
TITO was launched using:
RESULT:
Template:
2JTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13152 for 285 contacts (-46.1/contact) +
2D Compatibility (PS) -5346 + (NN) 321 + (LL) 852
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -19575.0 ( -68.68 by residue)
QMean score : 0.306
(partial model without unconserved sides chains):
PDB file :
Tito_2JTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JTM-query.scw
PDB file :
Tito_Scwrl_2JTM.pdb
: