Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TRVESFGEVAQSCVVT--ELAPCLPAMTLTGD-PTTECCDKLVE-----------QKPCLCGYIRNPAYSMY--VTSPNARKVLDFCKVPFPSC
1AFH Chain:A ((2-80))
----------ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34288 for 432 contacts (-79.4/contact) +
2D Compatibility (PS) -6309 + (NN) -769 + (LL) 860
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -44206.0 ( -102.33 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: