Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKSSPDNEAMKLAPCAEAAQDEKAAVSDSCCLQVKRMGQKPSCLCAVMLSDTAKASGVKIETAITIPKRCNIANRPVGYKCGGYTLP
1N89 Chain:A ((5-64))
-------------SQLAVCASAILSG-AKPSGECCGNLRAQ--Q-GCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAV-------------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20269 for 369 contacts (-54.9/contact) +
2D Compatibility (PS) -5728 + (NN) 1584 + (LL) -208
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -26571.0 ( -72.01 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: