Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGCDIDLLLPCLNASRDPRVKPDKRCCDAIRQFLPPRKQKSAIDCLCRLATSKEAVALKINLSAAIAIPQKCGIKFEQRFYCQG
1N89 Chain:A ((2-65))
--CQASQLAVCASAILSG-AKPSGECCGNLRAQ--------Q-GCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP-------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29705 for 414 contacts (-71.8/contact) +
2D Compatibility (PS) -6530 + (NN) -835 + (LL) 1116
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -38354.0 ( -92.64 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: