Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EGCDNDRQDMIRECAKYQKFPKEPKKDPSKACCAVWQKADF----------PCLCKDV------TKELEKVAYVAKFCKWPFP----SGYKCGSYTFPLGQ
1SIY Chain:A ((2-90))
-TCGQVQGNL-AQCIGFLQKG----GVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5380 for 452 contacts (-11.9/contact) +
2D Compatibility (PS) -7311 + (NN) -4607 + (LL) 568
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -19230.0 ( -42.54 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: