Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DDDTTLDCDSQVNGLVGNCMTAVLIGTKPSSKCCKFVRAAQP----------DCVCPKITGDVTKVLKLSTALKIAKRCNRELP----HNYQCGSYTLP
1SIY Chain:A ((2-90))
------TCGQVQGNL-AQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI---
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28144 for 527 contacts (-53.4/contact) +
2D Compatibility (PS) -7476 + (NN) 950 + (LL) 332
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -37088.0 ( -70.38 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: