Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VECKNNIADLLPCQAAAQSETSTPSTECCTAVGKFKDDPACLCSTIAAAQAAGFTIDAPVAATIPKRCKLDGYPTSCSKSK
1N89 Chain:A ((5-65))
-------SQLAVCASAILSG-AKPSGECCGNLRAQ--Q-GCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP--------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23637 for 385 contacts (-61.4/contact) +
2D Compatibility (PS) -5955 + (NN) -856 + (LL) 504
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -32744.0 ( -85.05 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: