Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QDCNGLVTTVISQCSGSYGNGSPPSAGCCRAARAVSN----------GCLCPKVTPQIAAAVNKQRIQAMASACNRPLP----R--TCGALQF
1SIY Chain:A ((2-90))
-TCGQVQGNL-AQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI--
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28786 for 510 contacts (-56.4/contact) +
2D Compatibility (PS) -7599 + (NN) -1856 + (LL) 576
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -42865.0 ( -84.05 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: