Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKTPIQSAAASLSSCLSAAGNAKAKVPPTCCTKVTALINTAPKCLCAVVLSPLAKKAGIKPAIAITIPKRCNIKNRPVGKKCGSYIIP
1N89 Chain:A ((5-65))
-------------SQLAVCASAILSG-AKPSGECCGNLRAQ---Q-GCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP------------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29078 for 385 contacts (-75.5/contact) +
2D Compatibility (PS) -5975 + (NN) 1337 + (LL) 988
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -34678.0 ( -90.07 by residue)
QMean score : 0.294
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: