Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKEQKCLFVTIAGLPNAGKSTLINSITGKKIAIVTPKVQTTRTQIRGIAIYNETQIIFTDSPGIFSAETKLEKALVKSAWSAIKGDDVILLLIDASSYLKNI-ERIKTIFTRLRHTKTKCIFVINKIDLVKKPELKMTYKHLDLLYKLKKIFTISALKSDGLSDLMDYLSEVAPVSPWFYGEDQVTDSSTSFLSAEITREKLFLNLREELPYSTAVITEQFEEKKDESLVIKQVIFVLKDSHKKIVLGKGGSNIKKIGIEARIELEKLFERKVHLFLFVKVRPWTDRPEEYIDDV |
4DCU Chain:A ((26-181)) | --------VAIVGRPNVGKSTIFNRIAGERIS-----------RIYSSAEWLNYDFNLIDTGG------PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR---TKKPVVLAVNKL-----------YDFYSLGF--GEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DCU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118192 for 980 contacts (-120.6/contact) +
2D Compatibility (PS) -13888 + (NN) -3799 + (LL) 3916
1D Compatibility (HY) -10000 + (ID) 1950
Total energy: -143913.0 ( -146.85 by residue)
QMean score : 0.551
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