Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------------MDRLKKIHWLLVTNVIALFCIGIVVQYSSAGGKWAPFAIHQ----------LVIFSFFFLLAIAMSFIELDFYLKHAYFF----YIAAVI-----------------SLLVVNFFGLYTMGATRWIRIGPISLQPSE--FAKVG-LILALARYFNKQSVYKMME-FQRLLKALIFIFLPVF------LVLKQPNLGTAVIMLFIGASIIFTAIIKRAHLIIYGIISILVIPAIWPSLRSYHKQRILSFL---DSSVDPLGIGYNAQQSQ----IAIGSGGLFGKSFVSGSQTQLGFLP------EKHTDFAFAVLSEEWGFLGSMTLIVL----YTTLLAIIFS-------IAYRSKNYFSKLVSIGIFAFFGVHFFIN--IGMTIGLLPVIGDPLPFLSYG---GSTTAASSICIGLLLSS----VASMKDLKLKLSISSIERPVV---------------------------------- |
| 4PQG Chain:A ((6-511)) | HHHMTIYNINLGIGWASSGVEYAQAYRAGVFRKLNLSSKFIFTDMILADNIQHLTANIGFDDNQVIWLYNHFTDIKIAPTSVTVDDVLAYFGGEESHREKNGKVLRVFFFDQDKFVTCYLVDENKDLVQHAEYVFKGNLIRKDYFSYTRYCSEYFAPKDNVAVLYQRTFYNEDGTPVYDILMNQGKEEVYHFKDKIFYGKQAFVRAFMKSLNLNKSDLVILDRETGIGQVVFEEAQTAHLAVVVHAEHYSENATNEDYILWNNYYDYQFTNADKVDFFIVSTDRQNEVLQEQFAKYTQHQPKIVTIPVGSIDSLTDSSQGRKPFSLITASRLAKEKHIDWLVKAVIEAHKELPELTFDIYGSGGEDSLLREIIANHQAEDYIQLKGHAELSQ-----IYSQYEVYLTASTSEGFGLTLMEAIGSGLPLIGFDVPYGNQTFIEDGQNGYLIPSSSDHVEDQIKQAYAAKICQLYQENRLEAMRAYSYQIAEGFLTKEILEKWKKTVEEVLHD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PQG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -294808 for 2531 contacts (-116.5/contact) +
2D Compatibility (PS) -38388 + (NN) 3004 + (LL) 372
1D Compatibility (HY) -14000 + (ID) 2650
Total energy: -346470.0 ( -136.89 by residue)
QMean score : 0.062
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