Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLEYTLTTNSVEVTVLPVYIEEQSIPYENCYVWMYNVKIKNKSLSTIQLLSRHWQIIDYKGKINEIVGAGVIGEQPVIKPGEVFKYTSGTYLNAPSG---IMQGKYEFLNEE---NTKVFEVTIPSFSL--DSPYTNIRPH
1MQM Chain:A ((236-297))
-----------------------------------------------------------------------------IVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKI
General information:
TITO was launched using:
RESULT:
Template:
1MQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6562 for 162 contacts (-40.5/contact) +
2D Compatibility (PS) -5607 + (NN) -1676 + (LL) 6168
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -11777.0 ( -72.70 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_1MQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MQM-query.scw
PDB file :
Tito_Scwrl_1MQM.pdb
: