Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKSDILCKRVIGIVGSGQLGKMTAIAATKLGQETHIFANAKDDPACSVANNLTIADFSDKKALESFAQSVSLVTIESENIPCDAIDIMSQYVDFYPGKRALHISQNRLREKDFIRNLGIRTADYKSIQDHNDLLEVTRAFGYPTRLKTTEMGYDGKGQYMIGNDSQVERFASFDWNAQYILEASVDLLKEVSIVVTRDKNGKVAFFPVAENHHVDGILDTSIVPAKVDSKLVQEIQQTAEKIADALDVVGILAIEFFITKNSELLVNELAPRPHNSCHWSLDACNVSQFEQLIRVICKLPMQEVVLRFPCMTKNIIGNDVYNTYKYLSDKRANLTIYGKKEVRGRRKMGHVNIDLS |
| 3ETJ Chain:A ((6-320)) | -------------VLGNGQLGRMLRQAGEPLG--IAVWPVGLDAEPAAV----------------PFQQSV--ITAEIERWPETALTRQLARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRL-RANETEQLPA-ECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFVTPQG-LLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDV--NYDWLKLPLVHLHWY-DKEVRPGRKVGHLNLTDS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ETJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -140240 for 2583 contacts (-54.3/contact) +
2D Compatibility (PS) -34438 + (NN) -9457 + (LL) 2304
1D Compatibility (HY) -20400 + (ID) 5200
Total energy: -207431.0 ( -80.31 by residue)
QMean score : 0.408
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