Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNNNDPTVNLPISIRKLSSNKFIEEICQDQFEDQDNALFEDSFINKIKEGDVVEGIITRVNPNDIVVHIGLKSDGRIPIKELGCNDKIVVGSKIRVYVERIEDYHGNVVLSREKAIRDEKWNKLEEDAVTKAEVSGVIKRSIKCGFIVDLGDGISAFLPLSHVDLKQVKDARHLIETEQKFIVLKMDKKQGNIVVSRKLVLEKLHAGEKTKFLEFLNEGDIIEGKIKSITHYGVFVGIHESDAVGVIDGLLHITDISWSRVSHPSAAFACGQIIKVKIIKIDKENAKVSLGIKQLEDNPWQDVESKYQVDSIHKGHITSIEDYGLFVELKPGIEGLVHSSEITWVKSNLPVNSLVTRGQEVSVKILNVDITKNRMSLSMKRCVDNPWQVFVNKYPPGSIVSGKVKNNTISYMSITFNDDEIDENVEGTIYAQDLSWSKNGSDEIKKYNVGDTIEAKVIRANVNRTRIYLGIKQIEYDPLIELIKKVKVGDKMQVTVGKREDSGLVVEVENDVALLIDQEHLPESKKFSISDKIEVEVLGVEEYNVILSAK |
1YZ6 Chain:A ((7-85)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EYPEEGEFVVATVKRIHNYGAFL---ELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTIDAEFEITVPKPNGVEIIKEALIRARDRANKEKDVEVKFTYLGAPRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEK--------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YZ6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -54179 for 562 contacts (-96.4/contact) +
2D Compatibility (PS) -8064 + (NN) 1023 + (LL) 19600
1D Compatibility (HY) -6000 + (ID) 950
Total energy: -48570.0 ( -86.42 by residue)
QMean score : 0.441
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