Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHLIVGLGNPGSQYELTYHNIGFIIVDAICKHWNFQ-SFSKKADCLITSSVINDNKIMLMKPYSFMNNSGIPVARIRNFYKFSLDNVIVIHDDADLEPGRIKIKKGGGSAGHNGLKSIDSSIGNDYWRLRFGIGRSDSQRSLADYVLSKFSNLDDVI--PLVERIAQNIHLMLQGNNIAFTNSIV
4LWQ Chain:A ((9-190))
--LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMNQIN
General information:
TITO was launched using:
RESULT:
Template:
4LWQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129149 for 1465 contacts (-88.2/contact) +
2D Compatibility (PS) -19119 + (NN) -3271 + (LL) 252
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -165137.0 ( -112.72 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_4LWQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWQ-query.scw
PDB file :
Tito_Scwrl_4LWQ.pdb
: