Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLSIVVAPDERLTTRASEVTGINDKIKELVNDMFETMYNAEGLGLAAVQIGVLKRIFVMDIQLEDIKGEPVGYESTGKFCMINPEITELSDEQVILKEGCLSIPEQSHEIRRPKYLTVKYKDLNNKEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAEKFKRHYER
1BS8 Chain:A ((3-163))
---LQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVID----------VSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKAR
General information:
TITO was launched using:
RESULT:
Template:
1BS8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96617 for 1246 contacts (-77.5/contact) +
2D Compatibility (PS) -17001 + (NN) -408 + (LL) 896
1D Compatibility (HY) -13600 + (ID) 3650
Total energy: -130380.0 ( -104.64 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_1BS8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BS8-query.scw
PDB file :
Tito_Scwrl_1BS8.pdb
: