Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFKSIFTFSFFTAVSRISGLIRDILIAMVVGATSLADVFFSSFRFASLFRAFFAERAFATSFVPLYSAESRDSKRAFNFASSVISITFIIVLNFCLIMQTFFSYMVQIFTPGFDQSKLALAVTLSRIMMPYIIFASIASLIGGMLQVKQHFASTAIAPIILNLCLIASLLVPYIKTPAHNLSIAVLIGGMLQLLLMLFGAYKLKAFFFFSMKLSNEVKLFFKRVIPAIINSCVIQISLWIDTIMASFIPNAVSYIYYADRLNQLPQGVVGTAIGTVLLPLISKQANDTENTVKIQNRALNIGLMLIMPTTAAFIIIPNTILLTLFSYGKFDHYAVQQTAPTLIALSLSLPAFIINKVLLPTFFAKSNLKIPTIFSLACLGINVVLNLLLMNKYQHTGIAIATSISTWINSILLINYLTINKMYKANQVLLLNIAKILVATAVMSVALYVSSSLSAGLFFDRIFARVIYLAALVVLSAVIYFGTLYLMFMGDFKCTKL |
4TNW Chain:A ((1-342)) | -----------------------------SDSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKID----------VVNMEYSAQLT---LRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPN----------EKQAYKHTIDKP--------------NVLIRIHNDG---TVLYSVRISLVLSCPMYLQYY-------------------PMDVQQCSIDLASY------AYTTKDIEYLWKEHSPLQLKVGL-SSSLPSFQLTNTSTTYCTSVTNTGIYS------------------CLRTTIQLKR----EFSFYLLQLYIPSCMLVIVSWVSFWFDR--------------TAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYI-------------------KAIDVWIGACMTFIFC-ALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGHHH---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TNW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -286348 for 2436 contacts (-117.5/contact) +
2D Compatibility (PS) -35147 + (NN) -627 + (LL) 15460
1D Compatibility (HY) -16400 + (ID) 3050
Total energy: -326112.0 ( -133.87 by residue)
QMean score : 0.086
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