Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDNLVCMGIITSPHGIKGAVKVKIFTEKPENISLYGKLISGSKNYDIDSVSVIGENLVIATINGVNSRNEAEFLRNKKLYVERNKLLKLNDENEFYQSDLVNMEIRLENDELYGYIKSIYNFGSGDILEISVISTKKNIMLPFTKEIFPYVNIKERYITLNMPEFIG
2HVY Chain:B ((33-66))
-----------------------------------------------------------------------------------------------------LNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVSNPEIYVGEVLYVDE------------------
General information:
TITO was launched using:
RESULT:
Template:
2HVY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15996 for 152 contacts (-105.2/contact) +
2D Compatibility (PS) -3739 + (NN) -1572 + (LL) 7492
1D Compatibility (HY) -2400 + (ID) 200
Total energy: -16415.0 ( -107.99 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_2HVY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HVY-query.scw
PDB file :
Tito_Scwrl_2HVY.pdb
: