Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSLYLRSHS--LSKLNSSLFAVNNNQNVEPRS-DISTGLFKLKNSVYPP------TFTMGSHLSNNKILPLYCQNHGHDNMQYYN-----IIIWITTMLKA
1JDQ Chain:A ((1-98))
GSSHHHHHHSSGLVPRGSHMAKYQVTKTLDVRGEVCPVPDVETKRALQNMKPGEILEVWIDY-PMSKERIPETVKKLGHEVLEIEEVGPSEWKIYIKVK---
General information:
TITO was launched using:
RESULT:
Template:
1JDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16147 for 429 contacts (-37.6/contact) +
2D Compatibility (PS) -9113 + (NN) -2361 + (LL) 428
1D Compatibility (HY) -400 + (ID) 650
Total energy: -28243.0 ( -65.83 by residue)
QMean score : 0.062
(partial model without unconserved sides chains):
PDB file :
Tito_1JDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JDQ-query.scw
PDB file :
Tito_Scwrl_1JDQ.pdb
: